AlloRep
A Repository of LacI/GalR Data

About

This database is a repository for sequence, structural, and mutation data for homologs of the LacI/GalR transcription regulators. The database was compiled by the Swint-Kruse and Teichmann Laboratories.

Get Started

Get started by downloading the database using the buttons above. The SQL format is recommended because it will allow you to perform queries on the data. A tab-delimited format for each table in the database is also available.

You can import the SQL formatted file into a local MySql database using the following instructions [External links]:

• For MySql Workbench: Instructions (scroll down to section on import)
• On the command line: Instructions

Text (Tab-Delimited) formatted tables can be read in a text editor (e.g. Notepad++ or spreadsheet software (e.g. Microsoft Excel).

Read the documentation [PDF] and review sample queries [ZIP] to get started.

Citation Information

Please cite the following two article for projects using allorep:

1. Sousa FL, Parente DJ, Shis DL, Hessman JA, Chazelle A, Bennett MR, Teichmann SA, Swint-Kruse L. AlloRep: A Repository of Sequence, Structural and Mutagenesis Data for the LacI/GalR Transcription Regulators. J Mol Biol. 2016 Feb 22;428(4):671-8. PMID 26410588

   Read the article in PubMed Central: PDF or In the Browser

2. Sousa FL, Parente DJ, Shis DL, Hessman JA, Chazelle A, Bennett MR, Teichmann SA, Swint-Kruse L. Data on publications, structural analyses, and queries used to build and utilize the AlloRep database. Data Brief. 2016 Jul 9;8:948-57. PMID 27508249

   Read the article: PDF [Pubmed Central] or In the Browser [Elsevier Open Access]

PMIDs for publications describing the individual LacI/GalR data are included in the database.